Publications of Gerhard Hummer

Mittal, J.; Truskett, T. M.; Errington, J. R.; Hummer, G.: Layering and position-dependent diffusive dynamics of confined fluids. Physical Review Letters 100 (14), p. 145901 (4) (2008)

Turjanski, A. G.; Gutkind, J. S.; Best, R. B.; Hummer, G.: Binding-induced folding of a natively unstructured transcription factor. PLoS Computational Biology 4 (4), e1000060 (2008)

Best, R. B.; Hummer, G.: Protein folding kinetics under force from molecular simulation. Journal of the American Chemical Society 130 (12), pp. 3706 - 3707 (2008)

Buchete, N.-V.; Hummer, G.: Peptide folding kinetics from replica exchange molecular dynamics. Physical Review E 77 (3 Pt 1), pp. 030902-1 - 030902-4 (2008)

Kim, Y. C.; Hummer, G.: Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding. Journal of Molecular Biology (London) 375 (5), pp. 1416 - 1433 (2008)

Milac, A. L.; Buchete, N. V.; Fritz, T. A.; Hummer, G.; Tabak, L. A.: Substrate-induced conformational changes and dynamics of UDP-N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferase-2. Journal of Molecular Biology 373 (2), pp. 439 - 451 (2007)

Zheng, W.; Brooks, B. R.; Hummer, G.: Protein conformational transitions explored by mixed elastic network models. Proteins: Structure, Function, and Bioinformatics 69 (1), pp. 43 - 57 (2007)

Hummer, G.: Water pulls the strings in hydrophobic polymer collapse. Proceedings of the National Academy of Sciences of the United States of America 104 (38), pp. 14883 - 14884 (2007)

Tuukkanen, A.; Kaila, V. R. I.; Laakkonen, L.; Hummer, G.; Wikström, M.: Dynamics of the glutamic acid 242 side chain in cytochrome c oxidase. Biochimica et Biophysica Acta: BBA 1767 (9), pp. 1102 - 1106 (2007)

Dudko, O. K.; Mathé, J.; Szabo, A.; Meller, A.; Hummer, G.: Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins. Biophysical Journal (Annual Meeting Abstracts) 92 (12), pp. 4188 - 4195 (2007)

Yin, H.; Hummer, G.; Rasaiah, J. C.: Metastable water clusters in the nonpolar cavities of the thermostable protein tetrabrachion. Journal of the American Chemical Society 129 (23), pp. 7369 - 7377 (2007)

Prag, G.; Watson, H.; Kim, Y. C.; Beach, B. M.; Ghirlando, R.; Hummer, G.; Bonifacino, J. S.; Hurley, J. H.: The Vps27/Hse1 complex is a GAT domain-based scaffold for ubiquitin-dependent sorting. Developmental Cell 12 (6), pp. 973 - 986 (2007)

Buchete, N.-V.; Hummer, G.: Structure and dynamics of parallel beta-sheets, hydrophobic core, and loops in Alzheimer's A beta fibrils. Biophysical Journal (Annual Meeting Abstracts) 92 (9), pp. 3032 - 3039 (2007)

Collins, M. D.; Quillin, M. L.; Hummer, G.; Matthews, B. W.; Gruner, S. M.: Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography. Journal of Molecular Biology (London) 367 (3), pp. 752 - 763 (2007)

Chen, Y.-G.; Hummer, G.: Slow conformational dynamics and unfolding of the calmodulin C-terminal domain. Journal of the American Chemical Society 129 (9), pp. 2414 - 2415 (2007)

Kim, Y. C.; Wikström, M.; Hummer, G.: Kinetic models of redox-coupled proton pumping. Proceedings of the National Academy of Sciences of the United States of America 104 (7), pp. 2169 - 2174 (2007)

Hummer, G.: Water, proton, and ion transport: from nanotubes to proteins. Molecular Physics 105 (2-3), pp. 201 - 207 (2007)

Dellago, C.; Hummer, G.: Kinetics and mechanism of proton transport across membrane nanopores. Physical Review Letters 97 (24), 245901 (2006)

Berezhkovskii, A. M.; Hummer, G.; Bezrukov, S. M.: Identity of distributions of direct uphill and downhill translocation times for particles traversing membrane channels. Physical Review Letters 97 (2), 020601 (2006)

Berezhkovskii, A. M.; Hummer, G.; Bezrukov, S. M.: Identity of distributions of direct uphill and downhill translocation times for particles traversing membrane channels. Physical Review Letters 97 (2), 020601 (2006)